Packages and Softwares developed

  1. Ghosh, T., Lui, V., Rudra, P., Seal, S., Vu, T., Hsieh, E., Ghosh, D., “Differential expression using kernel-based score test (cytoKernel)” (R-package hosted in Bioconductor)

  2. Shi, W., Russell, P., Rudra, P., Vestal, B., Kechris, K., Saba, L., “Heritability of Gene Expression for Next-Generation Sequencing (HeritSeq)” (R-package hosted in CRAN)

Codes for implementing statistical methods and replicating analysis

  1. Codes for Multi-omics Bayesian network, Rudra et al (2017), BMC Genomics

  2. Codes for batch normalization for mass cytometry data, Schuyler et al (2019), Frontiers in Immunology

  3. Codes for Compositional Data Analysis using Kernels (CODAK), Rudra et al (2021), bioRxiv