Google Scholar Profile


Publications in Peer-reviewed Journals

  1. Rudra, P., Baxter, R., Hsieh, E. W., & Ghosh, D. (2022). “Compositional Data Analysis using Kernels in mass cytometry data”. Bioinformatics Advances, 2(1).

  2. Duddy, H. R., Schoonover, M. J., Williams, M. R., & Rudra, P. (2022). “Healing time of experimentally induced distal limb wounds in horses is not reduced by local injection of equine-origin liquid amnion allograft”. American Journal of Veterinary Research, 83(8).

  3. Jurek, K. A., Schoonover, M. J., Williams, M. R., & Rudra, P. (2022). “Effect of perfusate volume on amikacin concentrations after saphenous intravenous regional limb perfusion in standing, sedated horses”. Veterinary Surgery, 51(4), 665-673.

  4. Sypniewski, L. A., Knych, H., Breshears, M., Fang, W. B., Moody, D. E., Rudra, P., … & Brand˜ao, J. (2022). “Pharmacokinetics, blood and urine profile effects, and injection site histopathology following three daily injections of subcutaneous high concentration buprenorphine in New Zealand white rabbits (Oryctolagus cuniculus)”. Journal of Exotic Pet Medicine, 43, 51-56.

  5. Hiney, K., Sypniewski, L., Rudra, P., Pezeshki, A., & McFarlane, D. (2021). “Clinical health markers in dogs fed raw meat-based or commercial extruded kibble diets”. Journal of Animal Science, 99(6).

  6. Radcliffe, R.A., Dowell, R.D., Odell A., Richmond, P., Bennet, B., Larson, C., Kechris, K., Saba, L.M., Rudra, P., Shi, W. (2020). “Systems genetics analysis of the LXS recombinant inbred mouse strains: Genetic and molecular insights into acute ethanol tolerance”. PLOS ONE, 15(10).

  7. Rudra, P., Cruz-Cortes, E., Zhang, X., Ghosh, D. (2020). “Multiple testing approaches for hypotheses in integrative genomics”. Wiley Interdisciplinary Reviews: Computational Statistics, 12(6).

  8. Kordas, G., Rudra, P., Hendricks, A., Saba, L., Kechris, K. (2019). “Insight into genetic regulation of miRNA in mouse brain” BMC genomics, 20(1), 849.

  9. Schuyler, R.P., Jackson, C., Garcia-Perez, J.E., Baxter, R.M., Ogolla, S.O., Rochford, R., Ghosh, D., Rudra, P., Hsieh, E.W.Y. (2019). “Minimizing Batch Effects in Mass Cytometry Data” Frontiers in immunology, 10, 2367.

  10. Shi, W., Zhuang, Y., Russell, P., Hobbs, B.D., Rudra, P., Vestal, B., Hersh, C.P., Saba, L., Kechris, K. (2019). “Unsupervised discovery of phenotype specific multi-omics networks” Bioinformatics, 35(21) 4336-4343.

  11. Anantharajan, J., Zhou, Zhang, L., H., Hotz, T., Vincent, M.Y., Blevins, M., Jones, D., Jason, A.E., Kuan, J.W.L., Ng, E.Y., Khoon, Y.Y., Baburajendran, N., Lin, G., Hung, A.W., Joy, J., Patnaik, S., Marugan, J.,Rudra, P., Ghosh, D., Hill, J., Kaylor, T.H., Zhao, R., Ford, H., Kang, C. (2019). “Structural and functional analyses of an allosteric Eya2 phosphatase inhibitor” Molecular cancer therapeutics, 18(9), 1484-1496.

  12. Oliphant, M.U., Vincent, M.Y., Galbraith, M.D, Pandey, A., Zaberezhnvv, V.,Rudra, P., Johnson, K.R., Costello, J.C., Ghosh, D., DeGregori, J., Espinosa, J.M., Ford, H. (2019). “Six2 Mediates Late-stage Metastasis via Direct Regulation of Sox2 and Induction of a Cancer Stem Cell Program” Cancer Research, 79(4), 720-734.

  13. Nedumaran, B., Pineda, R.H., Rudra, P., Lee, S., Malykhina, A.P. (2019). “Association of genetic polymorphisms in the pore domains of mechano‐gated TREK‐1 channel with overactive lower urinary tract symptoms in humans.” Neurourology and Urodynamics, 38(1), 144-150.

  14. Rudra, P., Shi, W., Russell, P., Tabakoff, B., Hoffman P., Saba, L., Kechris, K. (2018). “Predictive Modeling of miRNA-mediated Predisposition to Alcohol-related Phenotypes in Mouse” BMC genomics, 19(1), 639.

  15. Rudra, P., Broadaway, K.A., Ware, E.B., Jhun, M.A., Bielak, L.F., Zhao, W., Smith, J.A., Peyser, P.A., Kardia, S.L., Epstein, M.P. and Ghosh, D. (2018). “Testing cross‐phenotype effects of rare variants in longitudinal studies of complex traits”. Genetic epidemiology, 42(4), 320-332.

  16. Zhang, L., Zhou, H., Li, X., Vartuli, R., Rowse, M., Xing, Y., Rudra, P., Ghosh, D., Zhao, R., Ford, H.L. (2018). “Eya3 Threonine Phosphatase Partners with PP2A to Induce c-Myc Stabilization and Tumor Progression”. Nature communications, 9(1), 1047.

  17. Russell, P., Vestal, B., Shi, W., Rudra, P., Dowell, R.D., Radcliffe R.A., Saba, L., Kechris, K. (2018). “miR-MaGiC improves quantification accuracy for small RNA-seq”. BMC Research Notes, 11(1), 296.

  18. Vartuli, R., Zhou, H., Zhang, L., Powers, R.K., Klarquist, J., Rudra, P., Vincent, M.Y., Ghosh, D., Costello, J.C., Kedl, R.M., Slansky, J.E., Zhao, R., Ford, H.L. (2018). “Eya3 promotes breast tumor-associated immune suppression via threonine phosphatase-mediated PD-L1 upregulation”. The Journal of Clinical Investigation, 128(6).

  19. Rudra, P., Vestal, B., Shi, W., Russell, P., Odell, A., Dowell, R.D., Radcliffe, R., Saba, L., Kechris, K. (2017). “Model Based Heritability Scores for High-throughput Sequencing Data”. BMC Bioinformatics, 18(1), 143.

  20. Rudra, P., Zhou, Y., Wright, F.A. (2017). “A Procedure to Detect General Association Based on Concentration of Ranks”. Stat, 6(1), 88-101.

  21. O’Gorman W.E., Kong D.S., Balboni I.M., Rudra, P., Bolen C.R., Ghosh, D., Davis M.M., Nolan G.P., Hsieh E.W.Y. (2017). “Mass Cytometry Identifies a Distinct Monocyte Cytokine Signature Shared by Clinically Heterogeneous Pediatric SLE Patients”. Journal of Autoimmunity, 81, 74-89.

  22. Getahun, A., Wemlinger, S., Rudra, P., Santiago, M., van Dyk, L., and Cambier, J. (2017). “Impaired B Cell Function During Viral Infections due to PTEN-mediated Inhibition of the PI3K Pathway”. Journal of Experimental Medicine, 214(4), 931-941.

  23. Nedumaran, B., Rudra, P., Burnham, E.L., Meacham, R.B., Malykhina, A.P. (2017). “Impact of Regular Cannabis Use on Biomarkers of Lower Urinary Tract Function”. Urology, 109, 223.e9-223.e16.

  24. Rudra, P., Sen, P.K., Burdine, J., Sen, S. (2016). “Effect of Stroke Prevention Medication on Aortic Atheroma Progression Assessed Using New Statistical Paradigm”. Journal of Medical Statistics and Informatics, 4(1), 4.

Technical Reports and Pre-prints

  1. Rudra, P., Baxter, R., Hsieh, E. W., & Ghosh, D. (2021). Compositional Data Analysis using Kernels in Mass Cytometry Data. bioRxiv.

  2. Bose, S., Pal, A., Mallick, J., Kumar, S. and Rudra, P., “A Hybrid Approach for Improved Content-based Image Retrieval using Segmentation”. (Technical report, BIRU/2012/3, Indian Statistical Institute)